recipe proteomiqon-joinquantpepionswithproteins

The tool JoinQuantPepIonsWithProteins combines results from ProteinInference and PSMBasedQuantification.

Homepage:

https://csbiology.github.io/ProteomIQon/

Documentation:

https://csbiology.github.io/ProteomIQon/tools/JoinQuantPepIonsWithProteins.html

Developer docs:

https://github.com/CSBiology/ProteomIQon

License:

MIT

Recipe:

/proteomiqon-joinquantpepionswithproteins/meta.yaml

Results from PSMBasedQuantification contain detailed information about the quantification of every peptide, but only basic informations about the protein they originated from. This information is obtained during the ProteinInference. This tool takes the results from both tools and combines the quantification information of each peptide with the more accurate information about the corresponding protein including its q-value.

package proteomiqon-joinquantpepionswithproteins

(downloads) docker_proteomiqon-joinquantpepionswithproteins

versions:

0.0.2-1,  0.0.1-1,  0.0.1-0

depends dotnet-runtime:

5.0.*

depends openssl:

1.1.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install proteomiqon-joinquantpepionswithproteins

and update with::

   mamba update proteomiqon-joinquantpepionswithproteins

To create a new environment, run:

mamba create --name myenvname proteomiqon-joinquantpepionswithproteins

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/proteomiqon-joinquantpepionswithproteins:<tag>

(see `proteomiqon-joinquantpepionswithproteins/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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