recipe proteomiqon-mzmltomzlite

The tool MzMLToMzLite allows to convert mzML files to mzLite files.

Homepage:

https://csbiology.github.io/ProteomIQon/

Documentation:

https://csbiology.github.io/ProteomIQon/tools/MzMLToMzLite.html

Developer docs:

https://github.com/CSBiology/ProteomIQon

License:

MIT

Recipe:

/proteomiqon-mzmltomzlite/meta.yaml

The success of modern proteomics was made possible by constant progression in the field of mass spectrometry. Over the course of the past years quite a few manufacturers of mass spectrometers have managed to establish themselfes in the field of biological research. Since aquisition and accession of mass spectra are performance critical processes, various performance optimized, but vendor specific and closed source formats have been developed to store raw MS data. This comes to the disadvantage for toolchain developers which want to provide tools for every scientist regardless of the format of their raw data.

package proteomiqon-mzmltomzlite

(downloads) docker_proteomiqon-mzmltomzlite

versions:

0.0.8-0,  0.0.5-0,  0.0.4-0

depends dotnet-runtime:

5.0.*

depends openssl:

1.1.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install proteomiqon-mzmltomzlite

and update with::

   mamba update proteomiqon-mzmltomzlite

To create a new environment, run:

mamba create --name myenvname proteomiqon-mzmltomzlite

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/proteomiqon-mzmltomzlite:<tag>

(see `proteomiqon-mzmltomzlite/tags`_ for valid values for ``<tag>``)

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Render an install-with-bioconda badge with the following MarkDown:

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