recipe prscs

PRS-CS is a Python based command line tool that infers posterior SNP effect sizes under continuous shrinkage (CS) priors using GWAS summary statistics and an external LD reference panel.

Homepage:

https://github.com/getian107/PRScs

License:

MIT

Recipe:

/prscs/meta.yaml

package prscs

(downloads) docker_prscs

versions:

1.1.0-0,  1.0.0-0

depends h5py:

depends python:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install prscs

and update with::

   mamba update prscs

To create a new environment, run:

mamba create --name myenvname prscs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/prscs:<tag>

(see `prscs/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/prscs/README.html)