recipe psmc

This software package infers population size history from a diploid sequence using the Pairwise Sequentially Markovian Coalescent (PSMC) model

Homepage:

https://github.com/lh3/psmc

License:

MIT license

Recipe:

/psmc/meta.yaml

package psmc

(downloads) docker_psmc

versions:

0.6.5-3,  0.6.5-2,  0.6.5-1,  0.6.5-0

depends libgcc:

>=12

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install psmc

and update with::

   mamba update psmc

To create a new environment, run:

mamba create --name myenvname psmc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/psmc:<tag>

(see `psmc/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/psmc/README.html)