recipe pureclip

PureCLIP is a tool to detect protein-RNA interaction footprints from single-nucleotide CLIP-seq data, such as iCLIP and eCLIP.

Homepage:

https://github.com/skrakau/PureCLIP

License:

GPLv3

Recipe:

/pureclip/meta.yaml

Links:

doi: 10.1186/s13059-017-1364-2

package pureclip

(downloads) docker_pureclip

versions:

1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.2-0,  1.1.1-1,  1.0.4-1,  1.0.4-0,  1.0.3-0,  1.0.2-0

depends bedtools:

depends meme:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pureclip

and update with::

   mamba update pureclip

To create a new environment, run:

mamba create --name myenvname pureclip

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pureclip:<tag>

(see `pureclip/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pureclip/README.html)