recipe purge_haplotigs

Pipeline to help with curating heterozygous diploid genome assemblies.

Homepage

https://bitbucket.org/mroachawri/purge_haplotigs/

License

MIT / MIT

Recipe

/purge_haplotigs/meta.yaml

package purge_haplotigs

(downloads) docker_purge_haplotigs

Versions

1.1.0-0, 1.0.4-0, 1.0.3-0, 1.0.1-0

Depends bedtools

>=2.25.0

Depends make

>=4.2.1

Depends minimap2

>=2.12

Depends perl

>=5.22.0

Depends r-base

>=3.4.1

Depends r-ggplot2

>=2.2.1

Depends samtools

>=1.3.1

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install purge_haplotigs

and update with:

conda update purge_haplotigs

or use the docker container:

docker pull quay.io/biocontainers/purge_haplotigs:<tag>

(see purge_haplotigs/tags for valid values for <tag>)