recipe pxblat

PxBLAT: An Efficient and Ergonomics Python Binding Library for BLAT.

Homepage:

https://github.com/ylab-hi/pxblat

Documentation:

https://pxblat.readthedocs.io/en/latest/

Developer docs:

https://pypi.org/project/pxblat/

License:

OTHER

Recipe:

/pxblat/meta.yaml

Links:

doi: 10.1101/2023.08.02.551686

package pxblat

versions:

1.1.20-0,  1.1.19-0,  1.1.18-0,  1.1.10-0,  1.1.8-0,  1.1.2-0,  1.1.1-0,  1.0.3-0,  1.0.0-0, 

1.1.20-0,  1.1.19-0,  1.1.18-0,  1.1.10-0,  1.1.8-0,  1.1.2-0,  1.1.1-0,  1.0.3-0,  1.0.0-0,  0.3.10-1,  0.3.10-0,  0.3.6-0,  0.3.5-0,  0.3.4-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.0-0

depends biopython:

depends deprecated:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends loguru:

depends mashumaro:

depends pybind11:

>=2.10.4

depends pysimdjson:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends rich:

depends typer:

depends urllib3:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pxblat

and update with::

   mamba update pxblat

To create a new environment, run:

mamba create --name myenvname pxblat

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pxblat:<tag>

(see `pxblat/tags`_ for valid values for ``<tag>``)

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