recipe pyani

pyani provides a package and script for calculation of genome-scale average nucleotide identity.

Homepage:

https://github.com/widdowquinn/pyani

Documentation:

https://widdowquinn.github.io/pyani

License:

MIT / MIT

Recipe:

/pyani/meta.yaml

Links:

doi: 10.1039/C5AY02550H, biotools: pyani

package pyani

versions:

0.2.13.1-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-0,  0.2.9-0,  0.2.7-1,  0.2.7-0,  0.2.3-0, 

0.2.13.1-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-0,  0.2.9-0,  0.2.7-1,  0.2.7-0,  0.2.3-0,  0.2.0-0

depends biopython:

depends blast:

depends blast-legacy:

depends intervaltree:

depends matplotlib-base:

depends mummer:

depends namedlist:

depends networkx:

depends numpy:

depends pandas:

depends python:

>=3.7

depends scipy:

depends seaborn-base:

depends sqlalchemy:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyani

and update with::

   mamba update pyani

To create a new environment, run:

mamba create --name myenvname pyani

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyani:<tag>

(see `pyani/tags`_ for valid values for ``<tag>``)

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