recipe pybedlite

Lightweight python classes for interfacing with bed intervals

Homepage:

https://pypi.org/project/pybedlite/

Documentation:

https://pybedlite.readthedocs.io/en/latest/

Developer docs:

https://github.com/fulcrumgenomics/pybedlite

License:

MIT / MIT

Recipe:

/pybedlite/meta.yaml

Links:

DOI: 10.5281/zenodo.11223166

package pybedlite

versions:

1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0,  0.1.0-1,  0.1.0-0,  0.0.4-0,  0.0.3-0,  0.0.2-0, 

1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0,  0.1.0-1,  0.1.0-0,  0.0.4-0,  0.0.3-0,  0.0.2-0,  0.0.1-1,  0.0.1-0

depends attrs:

>=23.0.0

depends cgranges:

>=0.1

depends libgcc:

>=13

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends typing_extensions:

>=3.7.4

depends typing_inspect:

>=0.3.1

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pybedlite

and update with::

   mamba update pybedlite

To create a new environment, run:

mamba create --name myenvname pybedlite

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pybedlite:<tag>

(see `pybedlite/tags`_ for valid values for ``<tag>``)

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