recipe pybel

PyBEL is a Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL).

Homepage:

https://pybel.readthedocs.io

Documentation:

https://pybel.readthedocs.io/en/latest/

Developer docs:

https://github.com/pybel/pybel

License:

APACHE / Apache-2.0

Recipe:

/pybel/meta.yaml

Links:

doi: 10.1093/bioinformatics/btx660

package pybel

(downloads) docker_pybel

versions:

0.13.2-0,  0.9.3-1,  0.9.3-0,  0.5.4-0,  0.4.0-0

depends bel-resources:

depends click:

depends click-plugins:

depends networkx:

>=2.1

depends pyparsing:

depends python:

>=3.5

depends requests:

depends requests-file:

depends sqlalchemy:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pybel

and update with::

   mamba update pybel

To create a new environment, run:

mamba create --name myenvname pybel

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pybel:<tag>

(see `pybel/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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