recipe pydamage

Damage parameter estimation for ancient DNA

Homepage:

https://github.com/maxibor/pydamage

License:

GPL-3.0

Recipe:

/pydamage/meta.yaml

package pydamage

versions:

0.80-0,  0.72-0,  0.71-0,  0.70-1,  0.70-0,  0.62-0,  0.61-0,  0.60-1,  0.60-0, 

0.80-0,  0.72-0,  0.71-0,  0.70-1,  0.70-0,  0.62-0,  0.61-0,  0.60-1,  0.60-0,  0.7-0

depends biopython:

depends click:

depends kneed:

depends matplotlib-base:

depends numba:

depends numpy:

depends pandas:

depends pysam:

>=0.13.0

depends python:

>=3.10

depends scipy:

depends statsmodels:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pydamage

and update with::

   mamba update pydamage

To create a new environment, run:

mamba create --name myenvname pydamage

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pydamage:<tag>

(see `pydamage/tags`_ for valid values for ``<tag>``)

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