recipe pydna

Representing double stranded DNA and simulating cloning, homologous recombination, Gibson assembly, Gel electrophoresis etc.

Homepage:

https://github.com/BjornFJohansson/pydna

License:

BSD / BSD-3-Clause

Recipe:

/pydna/meta.yaml

package pydna

versions:

3.1.0-0,  3.0.2-0,  3.0.1-0,  2.0.1-1,  2.0.1-0,  2.0.0a3-0

depends appdirs:

>=1.3.0

depends biopython:

>=1.65

depends networkx:

>=1.8.1

depends ordered-set:

>=2.0.1

depends prettytable:

>=0.7.2

depends pyparsing:

>=2.1.10

depends python:

>=3

depends requests:

>=2.12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pydna

and update with::

   mamba update pydna

To create a new environment, run:

mamba create --name myenvname pydna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pydna:<tag>

(see `pydna/tags`_ for valid values for ``<tag>``)

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