recipe pygcap

Python package for probe-based gene cluster finding in large microbial genome database.

Homepage:

https://github.com/jrim42/pyGCAP

License:

MIT / MIT

Recipe:

/pygcap/meta.yaml

Python package for probe-based gene cluster finding in large microbial genome database.

package pygcap

versions:

1.2.6-0,  1.2.5-0,  1.2.3-0,  1.2.2-0,  1.2.0-0,  1.1.6-0,  1.0.1-0,  0.0.7-0,  0.0.5-0

depends matplotlib-base:

depends pandas:

depends python:

>=3.6

depends requests:

depends ruamel.yaml:

0.16.12.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pygcap

and update with::

   mamba update pygcap

To create a new environment, run:

mamba create --name myenvname pygcap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pygcap:<tag>

(see `pygcap/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pygcap/README.html)