recipe pygenetic_code

Python code for translating sequences using different NCBI translation tables and genetic codes

Homepage:

https://github.com/linsalrob/genetic_codes

License:

MIT / MIT

Recipe:

/pygenetic_code/meta.yaml

Links:

doi: 10.5281/zenodo.10450718

package pygenetic_code

versions:

0.20.0-0

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends python:

>=3.12,<3.13.0a0

depends python_abi:

3.12.* *_cp312

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pygenetic_code

and update with::

   mamba update pygenetic_code

To create a new environment, run:

mamba create --name myenvname pygenetic_code

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pygenetic_code:<tag>

(see `pygenetic_code/tags`_ for valid values for ``<tag>``)

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