recipe pygtftk

The gtftk suite providing facilities to manipulate genomic annotations in gtf format.

Homepage

http://github.com/dputhier/pygtftk

License

MIT

Recipe

/pygtftk/meta.yaml

package pygtftk

(downloads) docker_pygtftk

Versions

1.0.7-0, 1.0.6-0, 1.0.5-0, 1.0.2-0, 1.0.1-0

Depends argparse

Depends bedtools

>=2.23

Depends biopython

>=1.69

Depends cffi

>=1.10.0

Depends cloudpickle

>=0.4.0

Depends cython

Depends ftputil

>=3.3.1,<4.0.0

Depends future

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends matplotlib

>=2.0.2

Depends mpmath

Depends nose

Depends numpy

Depends pandas

>=0.23.3

Depends plotnine

>=0.4.0

Depends pybedtools

>=0.7.8

Depends pybigwig

>=0.3

Depends pyparsing

>=2.2.0

Depends python

>=3.6,<3.7.0a0

Depends pyyaml

>=3.12

Depends requests

>=2.13.0

Depends scipy

>=1.1.0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pygtftk

and update with:

conda update pygtftk

or use the docker container:

docker pull quay.io/biocontainers/pygtftk:<tag>

(see pygtftk/tags for valid values for <tag>)