recipe pygtftk

The gtftk suite providing facilities to manipulate genomic annotations in gtf format.

Homepage:

http://github.com/dputhier/pygtftk

License:

MIT

Recipe:

/pygtftk/meta.yaml

package pygtftk

Versions:

1.6.2-1,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.5.3-1,  1.5.3-0,  1.5.1-0,  1.5.0-0,  1.4.0-0, 

1.6.2-1,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.5.3-1,  1.5.3-0,  1.5.1-0,  1.5.0-0,  1.4.0-0,  1.3.0-0,  1.2.7-2,  1.2.7-1,  1.2.7-0,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.2-0,  1.2.0-0,  1.1.4-2,  1.1.4-1,  1.1.4-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.9-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.2-0,  1.0.1-0

Depends:

• bedtools >=2.23.1

• billiard >=3.6.4.0

• biopython >=1.69

• bzip2

• cffi >=1.10.0

• cloudpickle >=0.4.0

• ftputil >=3.3.1,<4.0.0

• future

• libgcc-ng >=12

• liblapack >=3.9.0

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• matplotlib-base >=2.0.2

• mpmath >=1.1.0

• nose

• numpy >=1.15.3

• numpy >=1.24.3,<2.0a0

• openblas >=0.3.17

• pandas >=0.23.3

• plotnine >=0.4.0

• pybedtools >=0.7.8

• pybigwig >=0.3.12

• pyparsing >=2.2.0

• python >=3.9,<3.10.0a0

• python-graphviz

• python_abi 3.9.* *_cp39

• pyyaml >=3.12

• requests >=2.13.0

• scikit-learn >=0.21.2

• scipy >=1.1.0

• seaborn

• xz

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pygtftk

and update with:

conda update pygtftk

or use the docker container:

docker pull quay.io/biocontainers/pygtftk:<tag>

(see pygtftk/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pygtftk/README.html)