recipe pyngost

pyngoST: fast, simultaneous and accurate and multiple sequence typing of Neisseria gonorrhoeae genome collections

Homepage:

https://github.com/leosanbu/pyngoST

License:

GPL-3.0-only

Recipe:

/pyngost/meta.yaml

Links:

doi: 10.1099/mgen.0.001189

package pyngost

(downloads) docker_pyngost

versions:

1.1.3-0

depends biopython:

depends blast:

2.12.0

depends openpyxl:

depends pandas:

depends pyahocorasick:

depends pyfaidx:

depends python:

depends requests:

depends urllib3:

1.26.6

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyngost

and update with::

   mamba update pyngost

To create a new environment, run:

mamba create --name myenvname pyngost

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyngost:<tag>

(see `pyngost/tags`_ for valid values for ``<tag>``)

Download stats