recipe pyrad

Assembly and analysis of RADseq data sets

Homepage:

https://github.com/dereneaton/pyrad

License:

GPLv3

Recipe:

/pyrad/meta.yaml

package pyrad

(downloads) docker_pyrad

versions:

3.0.66-3,  3.0.66-2,  3.0.66-0,  3.0.64-0

depends muscle:

depends numpy:

depends python:

<3

depends scipy:

depends vsearch:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyrad

and update with::

   mamba update pyrad

To create a new environment, run:

mamba create --name myenvname pyrad

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyrad:<tag>

(see `pyrad/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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