recipe pyrodigal

Python bindings to Prodigal, an ORF finder for microbial sequences.

Homepage:

https://github.com/althonos/pyrodigal

Documentation:

https://pyrodigal.readthedocs.org/

License:

GPL / GPL-3

Recipe:

/pyrodigal/meta.yaml

Links:

doi: 10.21105/joss.04296

package pyrodigal

Versions:

2.1.0-3,  2.1.0-1,  2.1.0-0,  2.0.4-0,  2.0.3-0,  2.0.2-1,  2.0.2-0,  1.1.2-1,  1.1.2-0, 

2.1.0-3,  2.1.0-1,  2.1.0-0,  2.0.4-0,  2.0.3-0,  2.0.2-1,  2.0.2-0,  1.1.2-1,  1.1.2-0,  1.1.1-1,  1.1.1-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.7.3-0,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.4-1,  0.6.4-0,  0.6.2-0,  0.5.4-0,  0.5.3-0,  0.5.1-0,  0.5.0-0,  0.4.7-0,  0.4.6-1,  0.4.6-0,  0.4.5-0,  0.3.0-0,  0.2.1-1,  0.2.1-0

Depends:

• libgcc-ng >=12

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• setuptools

Required By:

• zol

• gecco

• rgi

• hafez

• dnaapler

• macrel

• pharokka

• bakta

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pyrodigal

and update with:

conda update pyrodigal

or use the docker container:

docker pull quay.io/biocontainers/pyrodigal:<tag>

(see pyrodigal/tags for valid values for <tag>)

Download stats

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