pysam

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Pysam is a python module for reading and manipulating Samfiles. It is a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Home https://github.com/pysam-developers/pysam
Versions 0.15.2, 0.15.1, 0.15.0.1, 0.15.0, 0.14.1, 0.14.0, 0.13.0, 0.12.0.1, 0.11.2.2, 0.11.2.1, 0.11.1, 0.11.0, 0.10.0, 0.9.1.4, 0.9.1, 0.9.0, 0.8.4, 0.8.4pre0, 0.8.3, 0.7.7
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pysam
Links biotools: pysam, doi: 10.1093/bioinformatics/btp352

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pysam

and update with:

conda update pysam

docker

A Docker container is available at https://quay.io/repository/biocontainers/pysam.