- recipe pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
- Homepage
- License
MIT
- Recipe
- Links
biotools: pysam, doi: 10.1093/bioinformatics/btp352
- package pysam¶
- Versions
0.19.0-0,0.18.0-2,0.18.0-1,0.18.0-0,0.17.0-1,0.17.0-0,0.16.0.1-3,0.16.0.1-2,0.16.0.1-1,0.19.0-0,0.18.0-2,0.18.0-1,0.18.0-0,0.17.0-1,0.17.0-0,0.16.0.1-3,0.16.0.1-2,0.16.0.1-1,0.16.0.1-0,0.16.0-1,0.16.0-0,0.15.4-1,0.15.4-0,0.15.3-3,0.15.3-1,0.15.3-0,0.15.2-9,0.15.2-8,0.15.2-7,0.15.2-6,0.15.2-5,0.15.2-4,0.15.2-3,0.15.2-2,0.15.2-1,0.15.2-0,0.15.1-0,0.15.0.1-1,0.15.0.1-0,0.15.0-0,0.14.1-1,0.14.1-0,0.14.0-2,0.14.0-1,0.14.0-0,0.13.0-0,0.12.0.1-2,0.12.0.1-1,0.12.0.1-0,0.11.2.2-2,0.11.2.2-1,0.11.2.2-0,0.11.2.1-0,0.11.1-0,0.11.0-0,0.10.0-13,0.10.0-12,0.10.0-11,0.10.0-10,0.10.0-9,0.10.0-8,0.10.0-7,0.10.0-6,0.10.0-5,0.10.0-4,0.10.0-3,0.10.0-1,0.9.1.4-1,0.9.1.4-0,0.9.1-12,0.9.1-11,0.9.1-10,0.9.1-9,0.9.1-8,0.9.1-7,0.9.1-6,0.9.1-5,0.9.1-4,0.9.1-3,0.9.1-2,0.9.1-1,0.9.1-0,0.9.0-2,0.9.0-1,0.9.0-0,0.8.4-0,0.8.4pre0-0,0.8.3-9,0.8.3-8,0.8.3-7,0.8.3-6,0.8.3-5,0.8.3-4,0.8.3-3,0.8.3-2,0.8.3-1,0.8.3-0,0.7.7-6,0.7.7-5,0.7.7-4,0.7.7-3,0.7.7-2,0.7.7-1,0.7.7-0- Depends
bzip2
>=1.0.8,<2.0a0libcurl
>=7.82.0,<8.0a0libdeflate
>=1.10,<1.11.0a0libgcc-ng
>=10.3.0libzlib
>=1.2.11,<1.3.0a0openssl
>=1.1.1n,<1.1.2apython
>=2.7,<2.8.0a0python_abi
2.7.* *_cp27muxz
>=5.2.5,<5.3.0a0zlib
>=1.2.11,<1.3.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install pysam
and update with:
conda update pysam
or use the docker container:
docker pull quay.io/biocontainers/pysam:<tag>
(see pysam/tags for valid values for
<tag>)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pysam/README.html)