pysam¶
Pysam is a python module for reading and manipulating Samfiles. It is a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
| Home | https://github.com/pysam-developers/pysam |
| Versions | 0.15.2, 0.15.1, 0.15.0.1, 0.15.0, 0.14.1, 0.14.0, 0.13.0, 0.12.0.1, 0.11.2.2, 0.11.2.1, 0.11.1, 0.11.0, 0.10.0, 0.9.1.4, 0.9.1, 0.9.0, 0.8.4, 0.8.4pre0, 0.8.3, 0.7.7 |
| License | MIT |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pysam |
| Links | biotools: pysam, doi: 10.1093/bioinformatics/btp352 |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install pysam
and update with:
conda update pysam
A Docker container is available at https://quay.io/repository/biocontainers/pysam.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/pysam/README.html)
