-
recipe
pysam
Pysam is a python module for reading and manipulating Samfiles. It is a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
- Homepage
- License
MIT
- Recipe
- Links
biotools: pysam, doi: 10.1093/bioinformatics/btp352
-
package
pysam
¶ -
- Versions
0.16.0.1-1
,0.16.0.1-0
,0.16.0-1
,0.16.0-0
,0.15.4-1
,0.15.4-0
,0.15.3-3
,0.15.3-1
,0.15.3-0
,0.16.0.1-1
,0.16.0.1-0
,0.16.0-1
,0.16.0-0
,0.15.4-1
,0.15.4-0
,0.15.3-3
,0.15.3-1
,0.15.3-0
,0.15.2-6
,0.15.2-5
,0.15.2-4
,0.15.2-3
,0.15.2-2
,0.15.2-1
,0.15.2-0
,0.15.1-0
,0.15.0.1-1
,0.15.0.1-0
,0.15.0-0
,0.14.1-1
,0.14.1-0
,0.14.0-2
,0.14.0-1
,0.14.0-0
,0.13.0-0
,0.12.0.1-2
,0.12.0.1-1
,0.12.0.1-0
,0.11.2.2-2
,0.11.2.2-1
,0.11.2.2-0
,0.11.2.1-0
,0.11.1-0
,0.11.0-0
,0.10.0-11
,0.10.0-10
,0.10.0-9
,0.10.0-8
,0.10.0-7
,0.10.0-6
,0.10.0-5
,0.10.0-4
,0.10.0-3
,0.10.0-1
,0.9.1.4-1
,0.9.1.4-0
,0.9.1-10
,0.9.1-9
,0.9.1-8
,0.9.1-7
,0.9.1-6
,0.9.1-5
,0.9.1-4
,0.9.1-3
,0.9.1-2
,0.9.1-1
,0.9.1-0
,0.9.0-2
,0.9.0-1
,0.9.0-0
,0.8.4-0
,0.8.4pre0-0
,0.8.3-7
,0.8.3-6
,0.8.3-5
,0.8.3-4
,0.8.3-3
,0.8.3-2
,0.8.3-1
,0.8.3-0
,0.7.7-4
,0.7.7-3
,0.7.7-2
,0.7.7-1
,0.7.7-0
- Depends
bzip2
>=1.0.8,<2.0a0
libcurl
>=7.71.1,<8.0a0
libdeflate
>=1.6,<1.7.0a0
libgcc-ng
>=7.5.0
openssl
>=1.1.1g,<1.1.2a
python
>=2.7,<2.8.0a0
python_abi
2.7.* *_cp27mu
xz
>=5.2.5,<5.3.0a0
zlib
>=1.2.11,<1.3.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install pysam
and update with:
conda update pysam
or use the docker container:
docker pull quay.io/biocontainers/pysam:<tag>
(see pysam/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pysam/README.html)