recipe pysam

Pysam is a python module for reading and manipulating Samfiles. It is a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Homepage

https://github.com/pysam-developers/pysam

License

MIT

Recipe

/pysam/meta.yaml

Links

biotools: pysam, doi: 10.1093/bioinformatics/btp352

package pysam

(downloads) docker_pysam

Versions
0.16.0.1-00.16.0-10.16.0-00.15.4-10.15.4-00.15.3-30.15.3-10.15.3-00.15.2-5

0.16.0.1-00.16.0-10.16.0-00.15.4-10.15.4-00.15.3-30.15.3-10.15.3-00.15.2-50.15.2-40.15.2-30.15.2-20.15.2-10.15.2-00.15.1-00.15.0.1-10.15.0.1-00.15.0-00.14.1-10.14.1-00.14.0-20.14.0-10.14.0-00.13.0-00.12.0.1-20.12.0.1-10.12.0.1-00.11.2.2-20.11.2.2-10.11.2.2-00.11.2.1-00.11.1-00.11.0-00.10.0-100.10.0-90.10.0-80.10.0-70.10.0-60.10.0-50.10.0-40.10.0-30.10.0-10.9.1.4-10.9.1.4-00.9.1-80.9.1-70.9.1-60.9.1-50.9.1-40.9.1-30.9.1-20.9.1-10.9.1-00.9.0-20.9.0-10.9.0-00.8.4-00.8.4pre0-00.8.3-60.8.3-50.8.3-40.8.3-30.8.3-20.8.3-10.8.3-00.7.7-30.7.7-20.7.7-10.7.7-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pysam

and update with:

conda update pysam

or use the docker container:

docker pull quay.io/biocontainers/pysam:<tag>

(see pysam/tags for valid values for <tag>)