recipe pyseer

Sequence Element Enrichment Analysis (SEER), python implementation

Homepage

https://github.com/mgalardini/pyseer

License

APACHE / Apache-2.0

Recipe

/pyseer/meta.yaml

Links

doi: 10.1093/bioinformatics/bty539, doi: 10.1101/852426v1

package pyseer

Versions

1.3.9-0,  1.3.8-0,  1.3.7-0,  1.3.6-1,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0, 

1.3.9-0,  1.3.8-0,  1.3.7-0,  1.3.6-1,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-1,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.2-0,  1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.2-0,  0.3.1-0

Depends

• bedops

• bedtools

• bwa

• dendropy

• glmnet_py

• mash

• matplotlib-base

• numpy

• pandas

• pybedtools

• pysam >=0.15.3

• python

• python-dateutil >=2.5.0

• scikit-learn

• scipy

• statsmodels >=0.10

• tqdm

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pyseer

and update with:

conda update pyseer

or use the docker container:

docker pull quay.io/biocontainers/pyseer:<tag>

(see pyseer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyseer/README.html)