recipe pyseer

Sequence Element Enrichment Analysis (SEER), python implementation

Homepage

https://github.com/mgalardini/pyseer

License

APACHE / Apache-2.0

Recipe

/pyseer/meta.yaml

Links

doi: 10.1093/bioinformatics/bty539

package pyseer

(downloads) docker_pyseer

Versions

1.3.0-0, 1.2.0-0, 1.1.2-0, 1.1.1-0, 1.1.0-1, 1.1.0-0, 1.0.2-0, 0.3.1-0

Depends bedops

Depends bedtools

Depends bwa

Depends dendropy

Depends glmnet_py

Depends mash

Depends matplotlib

Depends numpy

Depends pandas

Depends pybedtools

Depends pysam

Depends python

Depends python-dateutil

>=2.5.0

Depends scikit-learn

Depends scipy

Depends statsmodels

!=0.9

Depends tqdm

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pyseer

and update with:

conda update pyseer

or use the docker container:

docker pull quay.io/biocontainers/pyseer:<tag>

(see pyseer/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyseer/README.html)