recipe pytabix

Fast random access to sorted files compressed with bgzip and indexed by tabix.

Homepage

https://github.com/slowkow/pytabix

License

MIT

Recipe

/pytabix/meta.yaml

package pytabix

Versions

0.1-0,  0.0.2-8,  0.0.2-7,  0.0.2-6,  0.0.2-5,  0.0.2-4,  0.0.2-3,  0.0.2-2,  0.0.2-1

Depends

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• zlib >=1.2.11,<1.3.0a0

Required By

• galaxy-ml

• hint

• ngsderive

• selene-sdk

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pytabix

and update with:

conda update pytabix

or use the docker container:

docker pull quay.io/biocontainers/pytabix:<tag>

(see pytabix/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pytabix/README.html)