recipe python-bioext

A few handy bioinformatics tools not already in BioPython



GPL3 / GPL-3



package python-bioext

(downloads) docker_python-bioext



depends biopython:


depends freetype:


depends joblib:

depends libgcc-ng:


depends libstdcxx-ng:


depends numpy:


depends numpy:


depends pysam:


depends python:


depends python_abi:

3.10.* *_cp310

depends scipy:

depends six:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install python-bioext

and update with::

   mamba update python-bioext

To create a new environment, run:

mamba create --name myenvname python-bioext

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `python-bioext/tags`_ for valid values for ``<tag>``)

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