recipe python-bioext

A few handy bioinformatics tools not already in BioPython

Homepage:

https://github.com/veg/BioExt.git

License:

GPL3 / GPL-3.0-only

Recipe:

/python-bioext/meta.yaml

package python-bioext

(downloads) docker_python-bioext

versions:
0.21.9-0,  0.21.8-1,  0.21.8-0,  0.21.7-1,  0.21.7-0,  0.21.2-0,  0.21.1-0,  0.21.0-0,  0.20.4-2, 

0.21.9-0,  0.21.8-1,  0.21.8-0,  0.21.7-1,  0.21.7-0,  0.21.2-0,  0.21.1-0,  0.21.0-0,  0.20.4-2,  0.20.4-1,  0.20.4-0,  0.20.2-0,  0.20.1-1,  0.20.1-0,  0.19.7-1,  0.19.7-0,  0.18.6-2,  0.18.6-1,  0.18.6-0,  0.17.4-0

depends biopython:

>=1.78

depends freetype:

depends joblib:

depends libgcc:

depends libgcc-ng:

>=12

depends libstdcxx:

depends libstdcxx-ng:

>=12

depends numpy:

>=1.22.4,<2.0a0

depends pysam:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scipy:

depends six:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install python-bioext

and update with::

   mamba update python-bioext

To create a new environment, run:

mamba create --name myenvname python-bioext

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/python-bioext:<tag>

(see `python-bioext/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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