recipe qcat

Qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

Homepage

https://github.com/nanoporetech/qcat

License

Mozilla Public License Version 2.0

Recipe

/qcat/meta.yaml

package qcat

(downloads) docker_qcat

Versions

1.0.1-0, 1.0.0-0

Depends biopython

Depends mappy

Depends pandas

Depends parasail-python

Depends pysam

Depends python

Depends pyyaml

Depends six

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install qcat

and update with:

conda update qcat

or use the docker container:

docker pull quay.io/biocontainers/qcat:<tag>

(see qcat/tags for valid values for <tag>)