recipe qhery

Identification of mutations in SARS-CoV-2 associated with resistance to treatment.

Homepage:

http://github.com/mjsull/qhery/

License:

GPL-3.0-only

Recipe:

/qhery/meta.yaml

package qhery

versions:

0.1.2-0

depends bcftools:

>=1.15.1

depends blast:

>=2.2

depends lofreq:

>=2.1.5

depends nextclade:

>=2.5.0

depends pysam:

>=0.19.1

depends python:

>=3.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install qhery

and update with::

   mamba update qhery

To create a new environment, run:

mamba create --name myenvname qhery

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/qhery:<tag>

(see `qhery/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/qhery/README.html)