recipe qiime/1.9.1

Quantitative Insights Into Microbial Ecology

Homepage

http://www.qiime.org

License

GNU General Public License v2 (GPLv2)

Recipe

/qiime/1.9.1/meta.yaml

Links

biotools: qiime, doi: 10.1038/nmeth.f.303

package qiime

Versions

1.9.1-3,  1.9.1-1,  1.9.1-0,  1.8.0-1,  1.8.0-0

Depends

• biom-format >=2.1.4,<2.2.0

• burrito >=0.9.1,<1.0.0

• burrito-fillings >=0.1.1,<0.2.0

• cogent 1.5.3

• emperor >=0.9.51,<1.0.0

• gdata

• matplotlib-base

• natsort <5.0.0

• numpy

• pandas >=0.13.1

• pynast 1.2.2

• python <3

• qcli >=0.1.1,<0.2.0

• qiime-default-reference >=0.1.2,<0.2.0

• scikit-bio >=0.2.3,<0.3.0

• scipy >=0.14.0

• xorg-libsm

• xorg-libxau

• xorg-libxdmcp

• xorg-libxext

• xorg-libxrender

• xz

Required By

• koeken

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install qiime

and update with:

conda update qiime

or use the docker container:

docker pull quay.io/biocontainers/qiime:<tag>

(see qiime/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/qiime/README.html)