- recipe qiime/1.9.1
Quantitative Insights Into Microbial Ecology
- Homepage:
- License:
GNU General Public License v2 (GPLv2)
- Recipe:
- Links:
biotools: qiime, doi: 10.1038/nmeth.f.303
- package qiime¶
- versions:
1.9.1-3,1.9.1-1,1.9.1-0,1.8.0-1,1.8.0-0- depends biom-format:
>=2.1.4,<2.2.0- depends burrito:
>=0.9.1,<1.0.0- depends burrito-fillings:
>=0.1.1,<0.2.0- depends cogent:
1.5.3- depends emperor:
>=0.9.51,<1.0.0- depends gdata:
- depends matplotlib-base:
- depends natsort:
<5.0.0- depends numpy:
- depends pandas:
>=0.13.1- depends pynast:
1.2.2- depends python:
<3- depends qcli:
>=0.1.1,<0.2.0- depends qiime-default-reference:
>=0.1.2,<0.2.0- depends scikit-bio:
>=0.2.3,<0.3.0- depends scipy:
>=0.14.0- depends xorg-libsm:
- depends xorg-libxau:
- depends xorg-libxdmcp:
- depends xorg-libxext:
- depends xorg-libxrender:
- depends xz:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install qiime and update with:: mamba update qiime
To create a new environment, run:
mamba create --name myenvname qiime
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/qiime:<tag> (see `qiime/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/qiime/README.html)
