recipe qualimap

Quality control of alignment sequencing data and its derivatives like feature counts

Homepage

http://qualimap.bioinfo.cipf.es/

License

GPLv2

Recipe

/qualimap/meta.yaml

Links

biotools: qualimap

package qualimap

Versions

2.2.2d-1,  2.2.2d-0,  2.2.2c-1,  2.2.2c-0,  2.2.2b-1,  2.2.2b-0,  2.2.2a-3,  2.2.2a-2,  2.2.2a-1, 

2.2.2d-1,  2.2.2d-0,  2.2.2c-1,  2.2.2c-0,  2.2.2b-1,  2.2.2b-0,  2.2.2a-3,  2.2.2a-2,  2.2.2a-1,  2.2.2a-0,  2.2-0,  2.1.3-1,  2.1.3-0,  2.1.1-0

Depends

• bioconductor-noiseq

• bioconductor-rsamtools

• bioconductor-rtracklayer

• fonts-conda-ecosystem

• openjdk

• r-optparse

• r-xml

Required By

• wg-blimp

• uvp

• targqc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install qualimap

and update with:

conda update qualimap

or use the docker container:

docker pull quay.io/biocontainers/qualimap:<tag>

(see qualimap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/qualimap/README.html)