- recipe quantms-utils
Python package with scripts and helpers for the quantms workflow
- Homepage:
- License:
MIT
- Recipe:
- package quantms-utils¶
- versions:
0.0.10-0
,0.0.9-0
,0.0.8-0
,0.0.7-0
,0.0.6-0
,0.0.5-0
,0.0.4-0
,0.0.3-0
,0.0.2-0
- depends click:
>=7.0
- depends deeplc:
2.2.38
- depends deeplcretrainer:
- depends ms2pip:
4.0.0.dev8
- depends ms2rescore:
3.0.3
- depends numpy:
- depends pandas:
>=1.0.0
- depends psm-utils:
0.8.2
- depends pydantic:
>=1.10,<2
- depends pyopenms:
>=2.9.1
- depends python:
>=3.7.0,<4.0.0
- depends scikit-learn:
- depends scipy:
1.13.1
- depends sdrf-pipelines:
>=0.0.29
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install quantms-utils and update with:: mamba update quantms-utils
To create a new environment, run:
mamba create --name myenvname quantms-utils
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/quantms-utils:<tag> (see `quantms-utils/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/quantms-utils/README.html)