recipe quantpi

A general profiling system focus on robust microbiome research

Homepage:

https://github.com/ohmeta/quantpi

License:

GPL / GPL-3.0-only

Recipe:

/quantpi/meta.yaml

Links:

biotools: quantpi

package quantpi

Versions:

0.2.0-0

Depends:

• bedtools

• biopython

• bowtie2

• bracken >=2.7

• bwa

• coverm >=0.6.1

• fastp

• fastqc

• humann

• kmcp >=0.8.2

• kraken2

• krakentools >=1.2

• krona

• matplotlib-base

• metaphlan

• multiqc

• natsort

• numpy

• openpyxl

• pandas

• pigz

• python

• ruamel.yaml

• sambamba

• samtools

• seaborn

• seqkit

• snakemake

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install quantpi

and update with:

conda update quantpi

or use the docker container:

docker pull quay.io/biocontainers/quantpi:<tag>

(see quantpi/tags for valid values for <tag>)

Download stats

Link to this page

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