- recipe quatradis
A set of tools to analyse the output from TraDIS analyses
- Homepage:
- License:
GPL3 / GPL-3.0-only
- Recipe:
- package quatradis¶
- versions:
1.0.2-0,1.0.1-1,1.0.1-0,0.8.3-0,0.8.2-0,0.7.0-1,0.7.0-0,0.6.2-0,0.5.4-0,1.0.2-0,1.0.1-1,1.0.1-0,0.8.3-0,0.8.2-0,0.7.0-1,0.7.0-0,0.6.2-0,0.5.4-0,0.4.9-0,0.4.5-1,0.4.5-0,0.4.4-0,0.4.2-1,0.4.2-0,0.3.4-0- depends biopython:
- depends bwa:
- depends cython:
- depends dendropy:
- depends graphviz:
- depends htslib:
- depends libgcc-ng:
>=12- depends matplotlib-base:
- depends minimap2:
- depends numpy:
- depends pandas:
- depends pysam:
>=0.18.0- depends python:
>=3.10,<3.11.0a0- depends python-graphviz:
- depends python_abi:
3.10.* *_cp310- depends r-base:
- depends r-getopt:
- depends r-mass:
- depends samtools:
- depends scipy:
- depends seaborn:
- depends setuptools:
- depends smalt:
- depends snakemake:
- depends snakeviz:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install quatradis and update with:: mamba update quatradis
To create a new environment, run:
mamba create --name myenvname quatradis
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/quatradis:<tag> (see `quatradis/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/quatradis/README.html)
