- recipe querynator
Python package to query cancer variant databases
- Homepage:
- Documentation:
- Developer docs:
- License:
MIT / MIT
- Recipe:
- Links:
biotools: querynator
- package querynator¶
- versions:
0.6.0-0,0.5.5-0,0.5.4-0,0.5.3-0,0.5.2-1,0.5.2-0,0.5.1-0,0.5.0-0,0.4.2-0,0.6.0-0,0.5.5-0,0.5.4-0,0.5.3-0,0.5.2-1,0.5.2-0,0.5.1-0,0.5.0-0,0.4.2-0,0.4.1-0,0.4.0-0,0.3.3-0,0.2.2-0,0.2.1-0,0.1.3-0- depends civicpy:
>=3.0.0- depends click:
>=8.1.3- depends httplib2:
- depends matplotlib-base:
>=3.6.1- depends numpy:
1.24.4- depends pandas:
1.5.3- depends pretty_html_table:
>=0.9.16- depends pytest:
>=6.2.4- depends python:
>=3.8,<3.11- depends pyvcf3:
>=1.0.3- depends requests:
- depends requests-cache:
- depends sphinx:
>=5.3.0- depends sphinx-rtd-theme:
- depends upsetplot:
>=0.8.0- depends urllib3:
<2- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install querynator and update with:: mamba update querynator
To create a new environment, run:
mamba create --name myenvname querynator
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/querynator:<tag> (see `querynator/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/querynator/README.html)
