recipe quick-variants

Fast and accurate genetic variant identification

Homepage:

https://github.com/caozhichongchong/QuickVariants

License:

MIT

Recipe:

/quick-variants/meta.yaml

package quick-variants

versions:

1.2.4-0

depends openjdk:

>=7,<=21

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install quick-variants

and update with::

   mamba update quick-variants

To create a new environment, run:

mamba create --name myenvname quick-variants

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/quick-variants:<tag>

(see `quick-variants/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/quick-variants/README.html)