recipe quickmerge

Quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences.

Homepage:

https://github.com/mahulchak/quickmerge

License:

GPL-3

Recipe:

/quickmerge/meta.yaml

package quickmerge

versions:

0.3-5,  0.3-4,  0.3-3,  0.3-2,  0.3-1,  0.3-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends mummer:

3.23.*

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends python:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install quickmerge

and update with::

   mamba update quickmerge

To create a new environment, run:

mamba create --name myenvname quickmerge

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/quickmerge:<tag>

(see `quickmerge/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/quickmerge/README.html)