recipe quota_anchor

Strand and WGD aware syntenic gene identification

Homepage:

https://github.com/baoxingsong/quota_Anchor

License:

MIT / MIT

Recipe:

/quota_anchor/meta.yaml

Strand and WGD aware syntenic gene identification for comparative genomics

package quota_anchor

versions:

0.0.1rc-0,  0.0.1b2-1,  0.0.1b2-0,  0.0.1b1-0,  0.0.1a1-0,  0.0.1a0-0

depends alive-progress:

depends anchorwave:

depends biopython:

depends blast:

depends diamond:

depends ete3:

depends gffread:

depends mafft:

depends matplotlib-base:

depends muscle:

depends numpy:

depends pal2nal:

depends paml:

depends pandas:

depends plotnine:

depends python:

>=3

depends scikit-learn:

depends seaborn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install quota_anchor

and update with::

   mamba update quota_anchor

To create a new environment, run:

mamba create --name myenvname quota_anchor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/quota_anchor:<tag>

(see `quota_anchor/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/quota_anchor/README.html)