recipe r-abdiv

Alpha and Beta Diversity Measures

Homepage:

https://github.com/kylebittinger/abdiv

License:

MIT

Recipe:

/r-abdiv/meta.yaml

'A collection of measures for measuring ecological diversity.

Ecological diversity comes in two flavors: alpha diversity measures the diversity within a single site or sample, and beta diversity measures the diversity across two sites or samples. This package overlaps considerably with other R packages such as ''vegan'', ''gUniFrac'', ''betapart'', and ''fossil''. We also include a wide range of functions that are implemented in software outside the R ecosystem, such as ''scipy'', ''Mothur'', and ''scikit-bio''. The implementations here are designed to be basic and clear to the reader.'

package r-abdiv

(downloads) docker_r-abdiv

versions:

0.2.0-2,  0.2.0-1,  0.2.0-0

depends r-ape:

depends r-base:

>=4.3,<4.4.0a0

depends r-testthat:

>=2.1.0

depends r-vegan:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-abdiv

and update with::

   mamba update r-abdiv

To create a new environment, run:

mamba create --name myenvname r-abdiv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-abdiv:<tag>

(see `r-abdiv/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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