recipe r-aroma.core

Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.

Homepage:

https://www.aroma-project.org/

Developer docs:

https://github.com/HenrikBengtsson/aroma.core

License:

LGPL / LGPL-2.1-or-later

Recipe:

/r-aroma.core/meta.yaml

package r-aroma.core

versions:

3.3.1-1,  3.3.1-0,  3.3.0-1,  3.3.0-0,  3.2.2-2,  3.2.2-1,  3.2.2-0,  3.2.1-2,  3.2.1-1, 

3.3.1-1,  3.3.1-0,  3.3.0-1,  3.3.0-0,  3.2.2-2,  3.2.2-1,  3.2.2-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2.0-1,  3.2.0-0,  3.1.3-2,  3.1.3-1,  3.1.3-0,  3.1.1-0,  3.0.0-0

depends r-base:

>=4.4,<4.5.0a0

depends r-biocmanager:

depends r-future:

depends r-listenv:

depends r-matrixstats:

>=0.57.0

depends r-pscbs:

>=0.65.0

depends r-r.cache:

>=0.14.0

depends r-r.devices:

>=2.16.1

depends r-r.filesets:

>=2.14.0

depends r-r.methodss3:

>=1.8.1

depends r-r.oo:

>=1.24.0

depends r-r.rsp:

>=0.44.0

depends r-r.utils:

>=2.10.1

depends r-rcolorbrewer:

>=1.1_2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-aroma.core

and update with::

   mamba update r-aroma.core

To create a new environment, run:

mamba create --name myenvname r-aroma.core

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-aroma.core:<tag>

(see `r-aroma.core/tags`_ for valid values for ``<tag>``)

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