recipe r-bseqsc

Companion package to: A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure. Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365

Homepage:

https://github.com/shenorrLab/bseqsc

License:

GPL / GPL-2

Recipe:

/r-bseqsc/meta.yaml

Links:

doi: 10.1016/j.cels.2016.08.011

package r-bseqsc

Versions:

1.0-2,  1.0-1,  1.0-0

Depends:

• bioconductor-annotationdbi >=1.48.0

• bioconductor-biobase >=2.46.0

• bioconductor-edger >=3.28.0

• bioconductor-preprocesscore >=1.48.0

• r-abind >=1.4_5

• r-base >=4.2,<4.3.0a0

• r-cssam >=1.4

• r-dplyr >=1.0.6

• r-e1071 >=1.7_7

• r-ggplot2 >=3.3.3

• r-nmf >=0.21.0

• r-openxlsx >=4.2.3

• r-pkgmaker >=0.32.2

• r-plyr >=1.8.6

• r-rngtools >=1.5

• r-scales >=1.1.1

• r-stringr >=1.4.0

• xbioc >=0.1.18

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-bseqsc

and update with:

conda update r-bseqsc

or use the docker container:

docker pull quay.io/biocontainers/r-bseqsc:<tag>

(see r-bseqsc/tags for valid values for <tag>)

Download stats

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