recipe r-deconstructsigs

Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.

Homepage:

https://github.com/raerose01/deconstructSigs

License:

GPL3 / GPL (>= 2)

Recipe:

/r-deconstructsigs/meta.yaml

package r-deconstructsigs

Versions:

1.9.0-2,  1.9.0-1,  1.9.0-0,  1.8.0.1-4,  1.8.0.1-3,  1.8.0.1-2,  1.8.0.1-1,  1.8.0.1-0,  1.8.0-2, 

1.9.0-2,  1.9.0-1,  1.9.0-0,  1.8.0.1-4,  1.8.0.1-3,  1.8.0.1-2,  1.8.0.1-1,  1.8.0.1-0,  1.8.0-2,  1.8.0-0

Depends:

• bioconductor-bsgenome

• bioconductor-bsgenome.hsapiens.ucsc.hg19

• bioconductor-genomeinfodb

• r-base >=4.2,<4.3.0a0

• r-reshape2

Required By:

• bioconductor-musicatk

• bioconductor-purecn

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-deconstructsigs

and update with:

conda update r-deconstructsigs

or use the docker container:

docker pull quay.io/biocontainers/r-deconstructsigs:<tag>

(see r-deconstructsigs/tags for valid values for <tag>)

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