recipe r-deconstructsigs

Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.

Homepage

https://github.com/raerose01/deconstructSigs

License

GPL3 / GPL (>= 2)

Recipe

/r-deconstructsigs/meta.yaml

package r-deconstructsigs

(downloads) docker_r-deconstructsigs

Versions

1.8.0.1-1, 1.8.0.1-0, 1.8.0-2, 1.8.0-0

Depends bioconductor-bsgenome

Depends bioconductor-bsgenome.hsapiens.ucsc.hg19

Depends bioconductor-genomeinfodb

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-reshape2

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-deconstructsigs

and update with:

conda update r-deconstructsigs

or use the docker container:

docker pull quay.io/biocontainers/r-deconstructsigs:<tag>

(see r-deconstructsigs/tags for valid values for <tag>)