recipe r-eacon

Easy Copy Number. EaCoN aims to be an all-packed in, user-friendly solution to perform relative or absolute copy-number analysis for multiple sources of data, with three different segmenters available (and corresponding three copy-number modelization methods)

Homepage:

https://github.com/gustaveroussy/EaCoN

License:

MIT

Recipe:

/r-eacon/meta.yaml

package r-eacon

Versions:

0.3.6-2,  0.3.6-1,  0.3.6-0,  0.3.5-1,  0.3.5-0,  0.3.4_1-1,  0.3.4_1-0

Depends:

• ascat >=3

• bioconductor-affxparser

• bioconductor-aroma.light

• bioconductor-biostrings

• bioconductor-bsgenome.hsapiens.1000genomes.hs37d5

• bioconductor-copynumber

• bioconductor-genomicranges

• bioconductor-limma

• bioconductor-rhdf5

• bioconductor-rsamtools

• r-base >=4.2,<4.3.0a0

• r-bedr

• r-changepoint

• r-data.table

• r-doparallel

• r-dplyr

• r-dt

• r-facets

• r-foreach

• r-iotools

• r-mclust

• r-rmarkdown

• r-seqinr

• r-sequenza

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-eacon

and update with:

conda update r-eacon

or use the docker container:

docker pull quay.io/biocontainers/r-eacon:<tag>

(see r-eacon/tags for valid values for <tag>)

Download stats

Link to this page

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