recipe r-efglmh

Functions For Working With Microhaps for EFGL

Homepage:

https://github.com/delomast/EFGLmh

License:

MIT

Recipe:

/r-efglmh/meta.yaml

Written to work with microhaps and SNPs (which are just short microhaps). More generally, will function with codominant, diploid genotypes. Uses "Progeny-style" (and FishGen-style) inputs. Performs basic manipulations, data summaries, and exporting data in formats for other packages/programs.

package r-efglmh

(downloads) docker_r-efglmh

versions:

0.1.0-0

depends r-base:

>=4.5,<4.6.0a0

depends r-dplyr:

depends r-readr:

depends r-tibble:

depends r-tidyr:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-efglmh

and update with::

   mamba update r-efglmh

To create a new environment, run:

mamba create --name myenvname r-efglmh

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-efglmh:<tag>

(see `r-efglmh/tags`_ for valid values for ``<tag>``)

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Link to this page

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