recipe r-facets

Cellular Fraction and Copy Numbers from Tumor Sequencing

Homepage:

https://github.com/mskcc/facets

License:

GPL3 / GPL (>= 2)

Recipe:

/r-facets/meta.yaml

Links:

biotools: facets

package r-facets

(downloads) docker_r-facets

versions:
0.6.2-7,  0.6.2-6,  0.6.2-5,  0.6.2-4,  0.6.2-3,  0.6.2-2,  0.6.2-1,  0.6.2-0,  0.6.1-1, 

0.6.2-7,  0.6.2-6,  0.6.2-5,  0.6.2-4,  0.6.2-3,  0.6.2-2,  0.6.2-1,  0.6.2-0,  0.6.1-1,  0.6.1-0,  0.5.14-4,  0.5.14-3,  0.5.14-2,  0.5.14-1,  0.5.14-0

depends libgcc:

>=13

depends libgfortran:

depends libgfortran5:

>=13.3.0

depends r-base:

>=4.4,<4.5.0a0

depends r-pctgcdata:

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-facets

and update with::

   mamba update r-facets

To create a new environment, run:

mamba create --name myenvname r-facets

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-facets:<tag>

(see `r-facets/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-facets/README.html)