- recipe r-garnett
Bioconda-installable version of Garnett cell classification tool.
- Homepage:
- Developer docs:
- License:
MIT / MIT
- Recipe:
- package r-garnett¶
-
- Versions:
0.2.8-4
,0.2.8-3
,0.2.8-2
,0.2.8-1
,0.2.8-0
,0.1.4-0
- Depends:
bioconductor-annotationdbi
>=1.44.0
bioconductor-biobase
>=2.42.0
bioconductor-delayedarray
>=0.8.0
bioconductor-delayedmatrixstats
>=1.4.0
bioconductor-org.hs.eg.db
>=3.7.0
r-assertthat
>=0.2.0
r-base
>=4.2,<4.3.0a0
r-doparallel
>=1.0.14
r-forcats
>=0.3.0
r-ggplot2
>=3.1.0
r-ggrepel
>=0.8.0
r-glmnet
>=2.0_16
r-igraph
>=1.2.2
r-irlba
>=2.3.2
r-matrix
>=1.2_15
r-plyr
>=1.8.4
r-rann
>=2.6
r-reshape2
>=1.4.3
r-rly
>=1.6.2
r-stringr
>=1.3.1
r-viridis
>=0.5.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-garnett
and update with:
conda update r-garnett
or use the docker container:
docker pull quay.io/biocontainers/r-garnett:<tag>
(see r-garnett/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-garnett/README.html)