- recipe r-htssip
Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
- Homepage:
- License:
GPL2 / GPL-2
- Recipe:
- package r-htssip¶
-
- Versions:
1.4.1-4
,1.4.1-3
,1.4.1-2
,1.4.1-1
,1.4.1-0
,1.4.0-3
,1.4.0-2
,1.4.0-1
,1.4.0-0
- Depends:
bioconductor-deseq2
>=1.16.1
bioconductor-phyloseq
>=1.20.0
r-ape
>=4.1
r-base
>=4.2,<4.3.0a0
r-coenocliner
>=0.2.2
r-dplyr
>=0.7.4
r-ggplot2
>=2.2.1
r-igraph
>=1.1.2
r-lazyeval
>=0.2.0
r-magrittr
>=1.5
r-plyr
>=1.8.4
r-stringr
>=1.2.0
r-tidyr
>=0.7.2
r-vegan
>=2.4.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-htssip
and update with:
conda update r-htssip
or use the docker container:
docker pull quay.io/biocontainers/r-htssip:<tag>
(see r-htssip/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-htssip/README.html)