recipe r-htssip

Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).

Homepage

https://CRAN.R-project.org/package=HTSSIP

License

GPL2 / GPL-2

Recipe

/r-htssip/meta.yaml

package r-htssip

Versions

1.4.1-1, 1.4.1-0, 1.4.0-3, 1.4.0-2, 1.4.0-1, 1.4.0-0

Depends

• bioconductor-deseq2 >=1.16.1

• bioconductor-phyloseq >=1.20.0

• r-ape >=4.1

• r-base >=4.0,<4.1.0a0

• r-coenocliner >=0.2.2

• r-dplyr >=0.7.4

• r-ggplot2 >=2.2.1

• r-igraph >=1.1.2

• r-lazyeval >=0.2.0

• r-magrittr >=1.5

• r-plyr >=1.8.4

• r-stringr >=1.2.0

• r-tidyr >=0.7.2

• r-vegan >=2.4.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-htssip

and update with:

conda update r-htssip

or use the docker container:

docker pull quay.io/biocontainers/r-htssip:<tag>

(see r-htssip/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-htssip/README.html)