recipe r-immucellaimouse

ImmuCellAI-mouse is a tool to estimate the abundance of 36 immune cells based on gene expression profile from RNA-Seq or microarray data.

Homepage:

https://github.com/lydiaMyr/ImmuCellAI-mouse

License:

GPL / GPL

Recipe:

/r-immucellaimouse/meta.yaml

Links:

doi: 10.1093/bioinformatics/btab711

package r-immucellaimouse

(downloads) docker_r-immucellaimouse

versions:

1.0-0

depends bioconductor-gsva:

depends r-base:

>=4.3,<4.4.0a0

depends r-dplyr:

depends r-mass:

depends r-rcpp:

>=0.12.14

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-immucellaimouse

and update with::

   mamba update r-immucellaimouse

To create a new environment, run:

mamba create --name myenvname r-immucellaimouse

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-immucellaimouse:<tag>

(see `r-immucellaimouse/tags`_ for valid values for ``<tag>``)

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Link to this page

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