recipe r-immunedeconv

collection of methods for immune cell deconvolution of bulk RNA-seq samples.

Homepage:

https://github.com/omnideconv/immunedeconv

License:

BSD / BSD_3_clause

Recipe:

/r-immunedeconv/meta.yaml

Links:

doi: 10.1101/463828

package r-immunedeconv

Versions:

2.1.2-1,  2.1.2-0,  2.1.1-1,  2.1.1-0,  2.1.0-1,  2.1.0-0,  2.0.3-2,  2.0.3-1,  2.0.3-0, 

2.1.2-1,  2.1.2-0,  2.1.1-1,  2.1.1-0,  2.1.0-1,  2.1.0-0,  2.0.3-2,  2.0.3-1,  2.0.3-0,  2.0.2-1,  2.0.2-0,  2.0.1-0,  2.0.0-0,  1.1.1-0

Depends:

• bioconductor-biobase

• bioconductor-biocparallel

• bioconductor-biomart

• bioconductor-preprocesscore

• bioconductor-quantiseqr

• bioconductor-sva

• r-base >=4.2,<4.3.0a0

• r-comics

• r-consensustme

• r-data.tree >=0.7

• r-dplyr >=0.7

• r-e1071 >=1.6

• r-epic >=1.1

• r-limsolve >=1.5.5.1

• r-magrittr >=1.5

• r-mcpcounter

• r-mmcpcounter

• r-readr >=1.1

• r-readxl >=1.0

• r-testit >=0.7

• r-tibble >=1.4.2

• r-xcell >=1.2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-immunedeconv

and update with:

conda update r-immunedeconv

or use the docker container:

docker pull quay.io/biocontainers/r-immunedeconv:<tag>

(see r-immunedeconv/tags for valid values for <tag>)

Download stats

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