recipe r-loom

An interface for the single-cell RNAseq-oriented loom format. Loom files are an HDF5-based format for storing and interacting with large single-cell RNAseq datasets. loomR provides an interface for working with loom files in a loom-specific way; we provide routines for validating loom files, iterating with chunks through data within the loom file, and provide a platform for other packages to build support for loom files.

Homepage

https://github.com/mojaveazure/loomR

License

GPL3 / GPL-3

Recipe

/r-loom/meta.yaml

package r-loom

(downloads) docker_r-loom

Versions

0.2.0.2-20.2.0.2-10.2.0.2-00.2.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-loom

and update with:

conda update r-loom

or use the docker container:

docker pull quay.io/biocontainers/r-loom:<tag>

(see r-loom/tags for valid values for <tag>)