recipe r-lymphclon

We provide a clonality score estimator that takes full advantage of the multi-biological-replicate structure of modern sequencing experiments; it specifically takes into account the reality that, typically, the clonal coverage is well below 0.1%.

Homepage:

https://CRAN.R-project.org/package=lymphclon

License:

LGPL / LGPL-2

Recipe:

/r-lymphclon/meta.yaml

package r-lymphclon

versions:

1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0

depends r-base:

>=4.4,<4.5.0a0

depends r-corpcor:

depends r-expm:

depends r-mass:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-lymphclon

and update with::

   mamba update r-lymphclon

To create a new environment, run:

mamba create --name myenvname r-lymphclon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-lymphclon:<tag>

(see `r-lymphclon/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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