recipe r-mgsz

Performs gene set analysis based on GSZ scoring function and asymptotic p-value. It is different from GSZ in that it implements asymptotic p-values instead of empirical p-values. Asymptotic p-values are calculated by fitting suitable distribution model to the null distribution. Unlike empirical p-values, resolution of asymptotic p-values are independent of the number of permutations and hence requires considerably fewer permutations. In addition, this package allows gene set analysis with seven other popular gene set analysis methods.

Homepage

https://CRAN.R-project.org/package=mGSZ

License

GPL3 / GPL (>= 2)

Recipe

/r-mgsz/meta.yaml

package r-mgsz

Versions

1.0-3,  1.0-2,  1.0-1,  1.0-0

Depends

• bioconductor-biobase

• bioconductor-limma

• r-base >=4.1,<4.2.0a0

• r-gsa

• r-ismev

• r-mass

Required By

• bioconductor-aspediafi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-mgsz

and update with:

conda update r-mgsz

or use the docker container:

docker pull quay.io/biocontainers/r-mgsz:<tag>

(see r-mgsz/tags for valid values for <tag>)

Download stats

Link to this page

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