recipe r-mytai

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) doi:10.1093/bioinformatics/btx835). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Homepage:

https://github.com/drostlab/myTAI

License:

GPL / GPL-2.0-or-later

Recipe:

/r-mytai/meta.yaml

package r-mytai

versions:

0.9.3-1,  0.9.3-0

depends bioconductor-edger:

depends fribidi:

>=1.0.10,<2.0a0

depends harfbuzz:

>=6.0.0,<7.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends r-base:

>=4.2,<4.3.0a0

depends r-doparallel:

>=1.0.8

depends r-dplyr:

>=0.3.0

depends r-fitdistrplus:

>=1.0_2

depends r-foreach:

>=1.4.2

depends r-ggplot2:

>=1.0.1

depends r-gridextra:

depends r-nortest:

>=1.0_2

depends r-r.utils:

>=2.12.2

depends r-rcolorbrewer:

>=1.1_2

depends r-rcpp:

>=0.12.0

depends r-rcpparmadillo:

depends r-readr:

>=0.2.2

depends r-reshape2:

>=1.4.1

depends r-scales:

depends r-taxize:

>=0.6.0

depends r-textshaping:

depends r-tibble:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-mytai

and update with::

   mamba update r-mytai

To create a new environment, run:

mamba create --name myenvname r-mytai

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-mytai:<tag>

(see `r-mytai/tags`_ for valid values for ``<tag>``)

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