recipe r-nanopore

R methods, associated with Nanopore tutorials, for analysis and presentation of Oxford Nanopore Technologies long-read sequence data

Homepage:

https://github.com/sagrudd/nanopoRe

License:

OTHER / MPL-2.0

Recipe:

/r-nanopore/meta.yaml

package r-nanopore

Versions:

0.2.9-5,  0.2.9-4,  0.2.9-3,  0.2.9-2,  0.2.9-1,  0.2.9-0,  0.2.8-0,  0.2.5-0

Depends:

• bioconductor-biostrings

• bioconductor-genomeinfodb

• bioconductor-genomicalignments

• bioconductor-genomicranges

• bioconductor-ggbio

• bioconductor-iranges

• bioconductor-rsamtools

• bioconductor-s4vectors

• bioconductor-shortread

• bioconductor-variantannotation

• libgcc-ng >=12

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-digest

• r-dplyr

• r-emojifont

• r-fastmatch

• r-gdata

• r-ggplot2

• r-gtools

• r-hmisc

• r-irdisplay

• r-jsonlite

• r-kableextra

• r-magrittr

• r-pbmcapply

• r-plyr

• r-r.utils

• r-rcolorbrewer

• r-rcpp

• r-rcurl

• r-reshape2

• r-rlang

• r-scales

• r-tibble

• r-vcfr

• r-writexl

• r-yaml

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-nanopore

and update with:

conda update r-nanopore

or use the docker container:

docker pull quay.io/biocontainers/r-nanopore:<tag>

(see r-nanopore/tags for valid values for <tag>)

Download stats

Link to this page

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