recipe r-noisyr

Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are used, one based on the count matrix, and one using the alignment BAM files directly. Contains several options for every step of the process, as well as tools to quality check and assess the stability of output.

Homepage:

https://github.com/Core-Bioinformatics/noisyR

License:

GPL2 / GPL-2.0-only

Recipe:

/r-noisyr/meta.yaml

package r-noisyr

Versions:

1.0.0-1,  1.0.0-0

Depends:

• bioconductor-genomicranges

• bioconductor-iranges

• bioconductor-preprocesscore

• bioconductor-rsamtools

• r-base >=4.2,<4.3.0a0

• r-doparallel

• r-dplyr

• r-foreach

• r-ggplot2

• r-magrittr

• r-philentropy

• r-tibble

Required By:

• r-bulkanalyser

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-noisyr

and update with:

conda update r-noisyr

or use the docker container:

docker pull quay.io/biocontainers/r-noisyr:<tag>

(see r-noisyr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-noisyr/README.html)